second is one which is pay for but has a free option.
I've used Mendeley during the beta stage and it's an excellent program.
I could drag and drop papers or URLs to be indexed. It would
automatically fill in the details and it was reasonably reliable at
getting these right. At some point the drag and drop feature for PDFs
stopped working properly so I stopped using it but it's an excellent
package apart from that bug.
http://www.mendeley.com/
Zotero is the open source equivalent. It's totally free I think. I've
not tried it so can't comment further.
https://www.zotero.org/
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